Supposing you have configured 2 instances of JBoss, one on port 11000 and another on 11100, then in order to shutdown the first JBoss instance use this command:

<jboss_home>\bin\shutdown.bat -s jnp://localhost:11000 -u <username> -p <password>

And for the second instance , use this command:

<jboss_home>\bin\shutdown.bat -s jnp://localhost:11100-u <username> -p <password>


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